PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01474.3.p
Common NameEUGRSUZ_F01474
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 202aa    MW: 22957.9 Da    PI: 4.8601
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01474.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.61.2e-55191231102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fd
  Eucgr.F01474.3.p  19 QLQMFWAGQmqeIEQTQDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFD 111
                       89****98877789******************************************************************************* PP

             NF-YC  91 flvdivprdelk 102
                       flvdi+prdelk
  Eucgr.F01474.3.p 112 FLVDIIPRDELK 123
                       *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.38E-346113IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.4E-3832105IPR009072Histone-fold
PfamPF008081.0E-2141104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDQTEQTQQQ QQQQQQQQQL QMFWAGQMQE IEQTQDFKNH SLPLARIKKI MKADEDVRMI  60
SAEAPVVFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIIPRD  120
ELKEEGLGVT KATIPVVGSP ADIPYYYVPP QHPMGHPSTI MGKPADQAAL YAAQQPQPPV  180
SFMPWPHAQS QQTQDDQQTN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C4e-4391198119HapE
4g91_C4e-4391198119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01474.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060859.11e-123PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_010060858.11e-123PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_010060857.11e-123PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG74e-83NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A059BPT11e-147A0A059BPT1_EUCGR; Uncharacterized protein
STRINGGLYMA08G17630.11e-105(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-81nuclear factor Y, subunit C2